BetaSCPWeb:
Side-chain Prediction for Protein Structures using Voronoi Diagrams and Geometry Prioritization

Home
Documents
  - About
  - Input/Output
  - System requirement
Example
(PDB code: 2l0b,
# residues: 91,
energy reduction: 19%)

BetaSCPWeb predicts the optimal side-chain conformation of protein structure using the input of an amino acid sequence and a backbone conformation and reports the predicted structure output as a visual, a textual, and a PDB file formats.
       Learn more...

1. Input sequence and backbone

    - PDB code:
    - PDB file:

2. Rotamer library

    Backbone-dependent (Dunbrack & Shapovalov, 2010)
    Backbone-dependent (Dunbrack & Cohen, 2002)
    Backbone-independent (Dunbrack & Cohen, 2002)

3. Prediction preference

    Energy minimized structure preference (by default)
    (If you also want the prediction for native structure preference, choose the other one, too.)
    Native structure preference

4. Submission

  * Citing BetaSCPWeb*
   J. Ryu, M. Lee, J. Cha, R. Laskowski, S.-E. Ryu, D.-S. Kim, BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization, Nucleic Acids Research, (doi: 10.1093/nar/gkw368), 2016.

   Contact Us